| Method | Number of proteins | Average N3.5A_Gbl% for all proteins | Comments |
|---|---|---|---|
| 3D-PSSM | 665 | 16.1 | |
| BLAST | 822 | 9.6 | |
| FUGUE | 768 | 15.6 | |
| hmap12 | ? | ? | no longer tested |
| Libellula | 305 | 13.2 | |
| LOOPP | ? | ? | no longer tested |
| pdbblast | ? | ? | no longer tested |
| Prospect | 164 | 12.5 | |
| PSI-BLAST | 839 | 10.6 | |
| PSPT | ? | ? | no longer tested |
| SAMt99 | 263 | 24.2 | |
| ssearch | 827 | 11.1 | |
| Superfamily | 456 | 14.1 |