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EVA summary for category threading, best of first 5 hits (2)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 959 394 method/index.html
3D-PSSM   665300method/3dpssm.html
BLAST   822354method/blast.html
FUGUE   768323method/fugue.html
Libellula   305146method/libellula.html
PSI-BLAST   839359method/psiblast.html
SAMt99   263166method/samt99.html
ssearch   827353method/ssearch.html
Superfamily   456200method/superfamily.html

 


Comparison of threading prediction methods (detail level 2)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 13513D-PSSM19
6.5
(+/-0.7)		14
3.4
(+/-0.2)		16
2.8
(+/-2.6)		28
9.8
(+/-1.8)		32.7
(+/-4.8)		42.8
(+/-5.1)
BLAST6
3.0
(+/-0.5)		6
2.6
(+/-0.2)		6
-9.7
(+/-2.5)		13
0.1
(+/-1.7)		16.4
(+/-3.4)		23.3
(+/-3.9)
FUGUE24
7.5
(+/-0.8)		19
3.8
(+/-0.2)		16
2.6
(+/-2.2)		28
10.9
(+/-2.0)		37.3
(+/-4.9)		47.7
(+/-5.3)
Libellula20
6.3
(+/-0.7)		11
3.1
(+/-0.2)		17
2.9
(+/-2.5)		26
7.4
(+/-2.0)		28.2
(+/-4.5)		38.0
(+/-4.9)
PSI-BLAST7
3.4
(+/-0.6)		7
2.4
(+/-0.2)		6
-10.7
(+/-3.0)		10
-1.9
(+/-1.8)		17.3
(+/-3.6)		22.8
(+/-3.8)
SAMt9920
6.4
(+/-0.8)		16
3.4
(+/-0.2)		13
-1.4
(+/-3.2)		22
8.3
(+/-2.2)		37.1
(+/-5.1)		45.1
(+/-5.2)
ssearch8
3.7
(+/-0.6)		6
3.0
(+/-0.1)		10
-1.3
(+/-2.0)		20
5.0
(+/-1.9)		18.6
(+/-4.5)		25.3
(+/-5.0)
Superfamily15
4.9
(+/-0.7)		11
3.1
(+/-0.2)		8
-2.9
(+/-2.6)		17
3.8
(+/-2.1)		29.1
(+/-4.7)		35.8
(+/-4.8)

 


Set 2

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 233313D-PSSM138
5.7
(+/-0.3)		70
3.0
(+/-0.0)		108
-0.8
(+/-0.6)		207
5.8
(+/-0.6)		24.0
(+/-1.4)		33.2
(+/-1.6)
BLAST35
2.5
(+/-0.1)		26
2.3
(+/-0.0)		43
-9.9
(+/-0.8)		86
-1.4
(+/-0.5)		14.4
(+/-1.1)		19.6
(+/-1.2)
FUGUE140
5.6
(+/-0.3)		95
3.2
(+/-0.0)		101
-0.5
(+/-0.6)		206
6.1
(+/-0.6)		23.4
(+/-1.5)		32.3
(+/-1.6)
PSI-BLAST46
2.8
(+/-0.2)		26
2.3
(+/-0.1)		34
-11.8
(+/-0.7)		87
-1.8
(+/-0.5)		14.7
(+/-1.1)		19.9
(+/-1.1)
ssearch66
3.5
(+/-0.2)		51
2.7
(+/-0.0)		72
-2.4
(+/-0.6)		144
3.0
(+/-0.6)		15.7
(+/-1.4)		22.3
(+/-1.5)
Superfamily73
3.4
(+/-0.2)		43
2.7
(+/-0.0)		51
-4.6
(+/-0.6)		115
0.4
(+/-0.5)		17.6
(+/-1.3)		23.4
(+/-1.5)

 


Set 3

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 352713D-PSSM237
5.9
(+/-0.2)		124
3.1
(+/-0.0)		181
-0.1
(+/-0.5)		346
6.5
(+/-0.4)		24.6
(+/-1.2)		33.9
(+/-1.3)
BLAST49
2.4
(+/-0.1)		33
2.3
(+/-0.0)		63
-10.2
(+/-0.6)		122
-1.3
(+/-0.4)		13.1
(+/-0.9)		18.3
(+/-0.9)
FUGUE231
5.8
(+/-0.2)		161
3.3
(+/-0.0)		172
-0.1
(+/-0.4)		342
6.4
(+/-0.4)		23.2
(+/-1.2)		32.0
(+/-1.3)
PSI-BLAST85
3.0
(+/-0.1)		51
2.3
(+/-0.0)		62
-11.0
(+/-0.6)		138
-1.3
(+/-0.4)		15.4
(+/-0.9)		20.5
(+/-0.9)
ssearch107
3.4
(+/-0.1)		79
2.7
(+/-0.0)		109
-2.3
(+/-0.4)		225
3.0
(+/-0.4)		15.2
(+/-1.1)		21.5
(+/-1.2)

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