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EVA summary for category threading, best of first 5 hits (1)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 959 394 method/index.html
3D-PSSM   665300method/3dpssm.html
BLAST   822354method/blast.html
FUGUE   768323method/fugue.html
Libellula   305146method/libellula.html
PSI-BLAST   839359method/psiblast.html
SAMt99   263166method/samt99.html
ssearch   827353method/ssearch.html
Superfamily   456200method/superfamily.html

 


Comparison of threading prediction methods (detail level 1)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) Sgnf(Z_CE) Sgnf(Q_LG1) Sgnf(Q_LG2) N3.5A_Gbl%
common 13513D-PSSM19
14
16
28
32.7
(+/-4.8)
BLAST6
6
6
13
16.4
(+/-3.4)
FUGUE24
19
16
28
37.3
(+/-4.9)
Libellula20
11
17
26
28.2
(+/-4.5)
PSI-BLAST7
7
6
10
17.3
(+/-3.6)
SAMt9920
16
13
22
37.1
(+/-5.1)
ssearch8
6
10
20
18.6
(+/-4.5)
Superfamily15
11
8
17
29.1
(+/-4.7)

 


Set 2

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) Sgnf(Z_CE) Sgnf(Q_LG1) Sgnf(Q_LG2) N3.5A_Gbl%
common 233313D-PSSM138
70
108
207
24.0
(+/-1.4)
BLAST35
26
43
86
14.4
(+/-1.1)
FUGUE140
95
101
206
23.4
(+/-1.5)
PSI-BLAST46
26
34
87
14.7
(+/-1.1)
ssearch66
51
72
144
15.7
(+/-1.4)
Superfamily73
43
51
115
17.6
(+/-1.3)

 


Set 3

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) Sgnf(Z_CE) Sgnf(Q_LG1) Sgnf(Q_LG2) N3.5A_Gbl%
common 352713D-PSSM237
124
181
346
24.6
(+/-1.2)
BLAST49
33
63
122
13.1
(+/-0.9)
FUGUE231
161
172
342
23.2
(+/-1.2)
PSI-BLAST85
51
62
138
15.4
(+/-0.9)
ssearch107
79
109
225
15.2
(+/-1.1)

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