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EVA summary for category threading, best of first 1 hits (1)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 959 394 method/index.html
3D-PSSM   665300method/3dpssm.html
BLAST   822354method/blast.html
FUGUE   768323method/fugue.html
Libellula   305146method/libellula.html
PSI-BLAST   839359method/psiblast.html
SAMt99   263166method/samt99.html
ssearch   827353method/ssearch.html
Superfamily   456200method/superfamily.html

 


Comparison of threading prediction methods (detail level 1)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) Sgnf(Z_CE) Sgnf(Q_LG1) Sgnf(Q_LG2) N3.5A_Gbl%
common 13513D-PSSM15
10
10
22
25.6
(+/-4.9)
BLAST4
3
3
8
13.3
(+/-3.3)
FUGUE19
14
12
23
32.6
(+/-5.0)
Libellula10
7
11
20
20.0
(+/-4.2)
PSI-BLAST6
5
5
8
12.9
(+/-3.3)
SAMt9919
15
11
20
33.1
(+/-4.8)
ssearch6
4
9
14
14.5
(+/-4.3)
Superfamily14
11
7
16
28.7
(+/-4.7)

 


Set 2

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) Sgnf(Z_CE) Sgnf(Q_LG1) Sgnf(Q_LG2) N3.5A_Gbl%
common 233313D-PSSM89
40
59
135
15.7
(+/-1.3)
BLAST31
18
30
58
10.9
(+/-1.1)
FUGUE93
62
56
137
16.6
(+/-1.4)
PSI-BLAST34
20
24
56
10.0
(+/-1.0)
ssearch39
30
49
92
11.8
(+/-1.3)
Superfamily63
34
31
89
15.0
(+/-1.2)

 


Set 3

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) Sgnf(Z_CE) Sgnf(Q_LG1) Sgnf(Q_LG2) N3.5A_Gbl%
common 352713D-PSSM158
78
104
221
16.7
(+/-1.1)
BLAST42
24
43
82
9.8
(+/-0.8)
FUGUE149
103
99
216
16.1
(+/-1.1)
PSI-BLAST62
41
44
93
10.7
(+/-0.8)
ssearch66
50
75
143
11.5
(+/-1.0)

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