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EVA summary for category sec (Pairwise)

Contents

Local link to information about methods evaluated
Pairwise analysis tables
For older versions of the results

About secondary structure prediction methods evaluated

Method		Nprot	Nweek	Detailed results for method
ALL		31	1	method/index.html

APSSP		26	1	method/apssp.html
APSSP2		26	1	method/apssp2.html
PHD		26	1	method/phd.html
PROFking		26	1	method/profking.html
PROFphd		26	1	method/profphd.html
Prospect		26	1	method/prospect.html
PSIpred		26	1	method/psipred.html
ROBETTA		30	1	method/robetta.html
SAM-T02sec		26	1	method/samt02.html
SAM-T99sec		26	1	method/samt99.html
SSpro2		26	1	method/sspro2.html

TABLES

table entries are mean differences between servers
[...] contain sample size
green color indicates the difference between two servers is significant
pink color indicates the difference between two servers is not significant
significance level is 0.95 of Student t-distribution

Comparison of secondary structure prediction methods (pairwise)

Analysis of Q3 score for Secondary Structure Prediction:

	sspro2	psipred	apssp2	samt02	samt99	profphd	prospect	robetta	profking	phd	apssp
1. sspro2		0.24 ± 3.46 [ 26]	0.28 ± 2.36 [ 26]	0.43 ± 4.04 [ 26]	2.27 ± 3.68 [ 26]	2.43 ± 5.35 [ 26]	2.95 ± 3.15 [ 26]	3.39 ± 4.28 [ 25]	4.17 ± 3.81 [ 26]	4.32 ± 3.88 [ 26]	8.98 ± 6.21 [ 26]
2. psipred	-0.24 ± 3.46 [ 26]		0.03 ± 2.61 [ 26]	0.18 ± 4.69 [ 26]	2.03 ± 4.32 [ 26]	2.19 ± 5.10 [ 26]	2.71 ± 3.97 [ 26]	3.26 ± 4.12 [ 25]	3.93 ± 4.52 [ 26]	4.07 ± 3.77 [ 26]	8.73 ± 6.30 [ 26]
3. apssp2	-0.28 ± 2.36 [ 26]	-0.03 ± 2.61 [ 26]		0.15 ± 3.84 [ 26]	1.99 ± 3.42 [ 26]	2.15 ± 5.66 [ 26]	2.67 ± 3.35 [ 26]	3.07 ± 3.24 [ 25]	3.89 ± 3.58 [ 26]	4.04 ± 3.74 [ 26]	8.70 ± 6.06 [ 26]
4. samt02	-0.43 ± 4.04 [ 26]	-0.18 ± 4.69 [ 26]	-0.15 ± 3.84 [ 26]		1.84 ± 4.47 [ 26]	2.00 ± 6.38 [ 26]	2.52 ± 4.87 [ 26]	3.15 ± 4.05 [ 25]	3.74 ± 5.57 [ 26]	3.89 ± 5.55 [ 26]	8.55 ± 7.40 [ 26]
5. samt99	-2.27 ± 3.68 [ 26]	-2.03 ± 4.32 [ 26]	-1.99 ± 3.42 [ 26]	-1.84 ± 4.47 [ 26]		0.16 ± 5.79 [ 26]	0.68 ± 4.83 [ 26]	1.10 ± 4.64 [ 25]	1.90 ± 4.30 [ 26]	2.05 ± 4.66 [ 26]	6.71 ± 6.24 [ 26]
6. profphd	-2.43 ± 5.35 [ 26]	-2.19 ± 5.10 [ 26]	-2.15 ± 5.66 [ 26]	-2.00 ± 6.38 [ 26]	-0.16 ± 5.79 [ 26]		0.52 ± 6.46 [ 26]	1.68 ± 4.93 [ 25]	1.74 ± 4.97 [ 26]	1.88 ± 4.18 [ 26]	6.55 ± 6.73 [ 26]
7. prospect	-2.95 ± 3.15 [ 26]	-2.71 ± 3.97 [ 26]	-2.67 ± 3.35 [ 26]	-2.52 ± 4.87 [ 26]	-0.68 ± 4.83 [ 26]	-0.52 ± 6.46 [ 26]		0.47 ± 4.83 [ 25]	1.22 ± 4.71 [ 26]	1.37 ± 5.01 [ 26]	6.03 ± 6.38 [ 26]
8. robetta	-3.39 ± 4.28 [ 25]	-3.26 ± 4.12 [ 25]	-3.07 ± 3.24 [ 25]	-3.15 ± 4.05 [ 25]	-1.10 ± 4.64 [ 25]	-1.68 ± 4.93 [ 25]	-0.47 ± 4.83 [ 25]		0.59 ± 4.86 [ 25]	0.84 ± 4.73 [ 25]	5.10 ± 7.07 [ 25]
9. profking	-4.17 ± 3.81 [ 26]	-3.93 ± 4.52 [ 26]	-3.89 ± 3.58 [ 26]	-3.74 ± 5.57 [ 26]	-1.90 ± 4.30 [ 26]	-1.74 ± 4.97 [ 26]	-1.22 ± 4.71 [ 26]	-0.59 ± 4.86 [ 25]		0.15 ± 4.19 [ 26]	4.81 ± 5.53 [ 26]
10. phd	-4.32 ± 3.88 [ 26]	-4.07 ± 3.77 [ 26]	-4.04 ± 3.74 [ 26]	-3.89 ± 5.55 [ 26]	-2.05 ± 4.66 [ 26]	-1.88 ± 4.18 [ 26]	-1.37 ± 5.01 [ 26]	-0.84 ± 4.73 [ 25]	-0.15 ± 4.19 [ 26]		4.66 ± 6.63 [ 26]
11. apssp	-8.98 ± 6.21 [ 26]	-8.73 ± 6.30 [ 26]	-8.70 ± 6.06 [ 26]	-8.55 ± 7.40 [ 26]	-6.71 ± 6.24 [ 26]	-6.55 ± 6.73 [ 26]	-6.03 ± 6.38 [ 26]	-5.10 ± 7.07 [ 25]	-4.81 ± 5.53 [ 26]	-4.66 ± 6.63 [ 26]

Analysis of sov score for Secondary Structure Prediction:

	samt02	psipred	sspro2	apssp2	profphd	prospect	samt99	profking	robetta	phd	apssp
1. samt02		0.15 ± 5.36 [ 26]	0.15 ± 4.36 [ 26]	0.55 ± 5.80 [ 26]	1.61 ± 6.17 [ 26]	1.98 ± 5.51 [ 26]	2.38 ± 5.02 [ 26]	2.89 ± 5.04 [ 26]	4.63 ± 11.25 [ 25]	5.06 ± 6.48 [ 26]	9.64 ± 8.75 [ 26]
2. psipred	-0.15 ± 5.36 [ 26]		0.00 ± 4.73 [ 26]	0.40 ± 4.62 [ 26]	1.46 ± 6.08 [ 26]	1.83 ± 5.67 [ 26]	2.23 ± 5.81 [ 26]	2.74 ± 5.97 [ 26]	4.49 ± 12.06 [ 25]	4.91 ± 5.81 [ 26]	9.50 ± 8.60 [ 26]
3. sspro2	-0.15 ± 4.36 [ 26]	-0.00 ± 4.73 [ 26]		0.40 ± 5.12 [ 26]	1.46 ± 5.65 [ 26]	1.83 ± 4.96 [ 26]	2.23 ± 4.14 [ 26]	2.74 ± 4.37 [ 26]	4.29 ± 12.14 [ 25]	4.91 ± 5.15 [ 26]	9.49 ± 8.99 [ 26]
4. apssp2	-0.55 ± 5.80 [ 26]	-0.40 ± 4.62 [ 26]	-0.40 ± 5.12 [ 26]		1.06 ± 7.09 [ 26]	1.43 ± 5.97 [ 26]	1.83 ± 5.37 [ 26]	2.34 ± 6.57 [ 26]	3.89 ± 11.20 [ 25]	4.51 ± 5.70 [ 26]	9.10 ± 9.74 [ 26]
5. profphd	-1.61 ± 6.17 [ 26]	-1.46 ± 6.08 [ 26]	-1.46 ± 5.65 [ 26]	-1.06 ± 7.09 [ 26]		0.37 ± 7.32 [ 26]	0.77 ± 6.74 [ 26]	1.28 ± 5.23 [ 26]	3.62 ± 12.28 [ 25]	3.45 ± 6.81 [ 26]	8.03 ± 8.59 [ 26]
6. prospect	-1.98 ± 5.51 [ 26]	-1.83 ± 5.67 [ 26]	-1.83 ± 4.96 [ 26]	-1.43 ± 5.97 [ 26]	-0.37 ± 7.32 [ 26]		0.40 ± 4.86 [ 26]	0.91 ± 4.90 [ 26]	2.40 ± 10.31 [ 25]	3.08 ± 5.75 [ 26]	7.66 ± 9.36 [ 26]
7. samt99	-2.38 ± 5.02 [ 26]	-2.23 ± 5.81 [ 26]	-2.23 ± 4.14 [ 26]	-1.83 ± 5.37 [ 26]	-0.77 ± 6.74 [ 26]	-0.40 ± 4.86 [ 26]		0.51 ± 4.52 [ 26]	2.00 ± 10.36 [ 25]	2.68 ± 5.59 [ 26]	7.26 ± 8.55 [ 26]
8. profking	-2.89 ± 5.04 [ 26]	-2.74 ± 5.97 [ 26]	-2.74 ± 4.37 [ 26]	-2.34 ± 6.57 [ 26]	-1.28 ± 5.23 [ 26]	-0.91 ± 4.90 [ 26]	-0.51 ± 4.52 [ 26]		1.80 ± 10.66 [ 25]	2.17 ± 6.31 [ 26]	6.75 ± 8.34 [ 26]
9. robetta	-4.63 ± 11.25 [ 25]	-4.49 ± 12.06 [ 25]	-4.29 ± 12.14 [ 25]	-3.89 ± 11.20 [ 25]	-3.62 ± 12.28 [ 25]	-2.40 ± 10.31 [ 25]	-2.00 ± 10.36 [ 25]	-1.80 ± 10.66 [ 25]		0.77 ± 12.27 [ 25]	4.68 ± 14.95 [ 25]
10. phd	-5.06 ± 6.48 [ 26]	-4.91 ± 5.81 [ 26]	-4.91 ± 5.15 [ 26]	-4.51 ± 5.70 [ 26]	-3.45 ± 6.81 [ 26]	-3.08 ± 5.75 [ 26]	-2.68 ± 5.59 [ 26]	-2.17 ± 6.31 [ 26]	-0.77 ± 12.27 [ 25]		4.58 ± 9.83 [ 26]
11. apssp	-9.64 ± 8.75 [ 26]	-9.50 ± 8.60 [ 26]	-9.49 ± 8.99 [ 26]	-9.10 ± 9.74 [ 26]	-8.03 ± 8.59 [ 26]	-7.66 ± 9.36 [ 26]	-7.26 ± 8.55 [ 26]	-6.75 ± 8.34 [ 26]	-4.68 ± 14.95 [ 25]	-4.58 ± 9.83 [ 26]

Last update: Feb 26, 2003

Contact: rost@columbia.edu

WWW: http://cubic.bioc.columbia.edu/eva

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