All threading methods

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All proteins predicted by each method are given, i.e. not only those used for common subsets
methods are sorted alphabetically
the second column gives the average accuracy over all proteins for the respective method
Note that the months are NOT NOT comparable between the methods since different sets are used!!
ASCII file with montly averages for methods

Method	Number of proteins	Average N3.5A_Gbl% for all proteins	Comments
3dpssm	32	58.8
3ds3	32	56.2
3ds5	32	57.0
3dsn	32	62.2
alax	31	54.9
arby	32	45.6
burnham	?	?	no longer tested
cmap	32	1.4
cnbpred	8	4.2
consens	32	50.6
esypred	31	60.7
fams	32	55.6
famsd	32	56.4
ffas03	32	58.5
3dpssm	?	?	no longer tested
forte1	32	57.0
fugsa	?	?	no longer tested
fugu2	32	55.2
fugu3	32	58.7
genthreader	32	54.2
hmmstr	31	16.8
inbgu	32	60.8
itsm	19	64.4
jigsaw	32	53.8
libellula	18	56.5
loopp	26	11.6
mgenthreader	32	58.2
modz	12	52.8
mpalign	32	49.5
orf_b	?	?	no longer tested
orf_c	?	?	no longer tested
orfblast	32	57.5
orfeus	32	60.6
pcomb	32	45.1
pcons2	32	58.4
pcons3	32	58.9
pdbblast	32	57.2
pilot	29	49.5
pmodel	32	60.8
pmodel3	32	60.1
prospect	32	57.1
protfinder	26	21.4
protinfoab	10	2.4
protinfocm	32	46.0
protinfofr	32	7.1
pspt	32	54.4
raptor	32	54.1
robetta	32	55.4
rpfold	29	43.1
samt02	32	59.7
samt99	32	58.1
shgu	32	57.7
superfamily	32	51.3
supfampp	32	39.9
tsunami	30	36.5