LOC3d:(database of predicted subcellular localization for PDB chains.)

Number of database entries: 8793

For each protein, subcellular localization predicions are made by upto 4 different methods: predictNLS (nuclear localization signals), LocHom (using homology), LocKey (using keywords) and Loc3D (using neural networks). 'Localization predicition 1' is our most confident subcellular localization prediction for the protein.

PDB identifier Localization prediction 1 Localization prediction 2 Localization prediction 3 Localization prediction 4
Method Loci Confidence Details Method Loci Confidence Details Method Loci Confidence Details Method Loci Confidence Details
1sgf_A LocHom Extracellular 100 try4_human LocKey Extracellular 100 Serine Loc3D Extracellular 76 No details.
1f0y_A LocHom Mitochondrial 100 hcdh_pig LocKey Mitochondrial 79.12 Fatty Loc3D Cytoplasmic 47 No details.
2abx_A LocKey Extracellular 100 Amidation,Neurotoxin,Venom Loc3D Extracellular 93 No details.
4cha_A LocHom Extracellular 100 ctra_bovin LocKey Extracellular 100 Thrombophilia,Inflammatory Loc3D Extracellular 80 No details.
1axm_A LocKey Extracellular 100 Growth LocHom Extracellular 94.11 fgf9_xenla Loc3D Extracellular 49 No details.
1ngs_B LocHom Chloroplast 100 tktc_soltu LocKey Nuclear 75.87 Transit Loc3D Cytoplasmic 58 No details.
1ghc LocHom Nuclear 100 h1t_rat LocKey Nuclear 100 Testis,Spermatogenesis,Chromosomal Loc3D Nuclear 80 No details.
1tmq_A LocHom Extracellular 100 amyp_mouse LocKey Extracellular 87.29 Calcium,Carbohydrate Loc3D Extracellular 76 No details.
1b4c_B LocHom Cytoplasmic 100 s10b_rat LocKey Cytoplasmic 100 Calcium-binding,Acetylation,Zinc,Metal-binding Loc3D Cytoplasmic 49 No details.
1ocz_B LocKey Mitochondrial 100 RNA Loc3D Cytoplasmic 58 No details.
1cay LocHom Cytoplasmic 100 cah2_rabit LocKey Cytoplasmic 100 Transit Loc3D Extracellular 49 No details.
1egc_B LocHom Mitochondrial 100 acdm_mouse LocKey Mitochondrial 83.61 Fatty Loc3D Mitochondrial 62 No details.
4pgm_B LocKey Cytoplasmic 100 Glycolysis,Muscle,Isomerase,Acetylation Loc3D Cytoplasmic 43 No details.
1a03_A LocKey Cytoplasmic 100 Calcium-binding,Mitogen,Copper,Acetylation,Cell LocHom Cytoplasmic 77.19 s10a_rat Loc3D Cytoplasmic 45 No details.
1nub_A LocKey Extracellular 100 Extracellular LocHom Extracellular 82.69 sprc_caeel Loc3D Extracellular 70 No details.
1hld_B LocHom Cytoplasmic 100 adha_perma LocKey Cytoplasmic 100 Plasmid,NADP,Acetylation,Zinc,NAD,Metal-binding,Oxidoreductase Loc3D Cytoplasmic 45 No details.
1hbt_L LocHom Extracellular 100 thrb_human LocKey Extracellular 100 Serine Loc3D Nuclear 80 No details.
1mne LocKey Cytoplasmic 100 Chemotaxis,Cytoskeleton,SH3 LocHom Cytoplasmic 69.89 mys9_drome Loc3D Cytoplasmic 58 No details.
1kax LocHom Cytoplasmic 100 hs7c_dicdi LocKey Nuclear 92.84 Transit Loc3D Mitochondrial 58 No details.
1san predictNLS Nuclear 100 RRMKWKK;[RK]R[MS]KxK[KR];[KR]{2}x{0,1}[KR]{2,4}x{25,34}K{2,4}x{1,2}K;[KR]{4}x{20,24}K{1,4}xK;R[RK]x[KR]x[RK]{2,}?[DE];QNRRxKx[RK][RK][DQE];[QMN]R[RK]xKx[RK][RK] LocHom Nuclear 100 hxb7_mouse LocKey Nuclear 100 Pair-rule Loc3D Nuclear 94 No details.
1ctx LocKey Extracellular 100 Toxin,Amidation,Neurotoxin,Venom Loc3D Extracellular 88 No details.
6gsx_A LocHom Cytoplasmic 100 gtm1_rat Loc3D Nuclear 62 No details.
1hms LocHom Cytoplasmic 100 fabh_pig LocKey Cytoplasmic 82.08 Muscle,Acetylation,Lipid-binding Loc3D Mitochondrial 54 No details.
1aa1_B LocHom Chloroplast 100 rbl_magla LocKey Chloroplast 100 Photorespiration,Cyanelle,Carbon Loc3D Mitochondrial 47 No details.
1fd4_M LocHom Extracellular 100 bd02_human LocKey Extracellular 77.93 Antibiotic Loc3D Extracellular 70 No details.
1mtn_B LocHom Extracellular 100 ctra_bovin LocKey Extracellular 87.29 Serine Loc3D Extracellular 80 No details.
2sbl_B LocHom Cytoplasmic 100 lox1_soybn LocKey Cytoplasmic 71.92 Transit Loc3D Cytoplasmic 62 No details.
1gfw_B LocHom Cytoplasmic 100 ice3_human Loc3D Nuclear 62 No details.
1psa_B LocHom Extracellular 100 pag_horse LocKey Extracellular 92.33 Zymogen,Plasma,Lysosome,Digestion Loc3D Extracellular 76 No details.
1zag_C LocHom Extracellular 100 za2g_rat LocKey Extracellular 86.1 Sulfation Loc3D Extracellular 58 No details.
1wfc LocKey Nuclear 100 Cell LocHom Nuclear 98.8 spk1_schpo Loc3D Cytoplasmic 49 No details.
1wav_E LocHom Extracellular 100 ins_canfa LocKey Extracellular 100 Pharmaceutical,Hormone,Insulin Loc3D Extracellular 94 No details.
1b9p_A LocHom Extracellular 100 ca1e_chick Loc3D Nuclear 94 No details. LocKey Extracellular 81.84 Extracellular
1gum_F LocHom Cytoplasmic 100 gta4_human Loc3D Nuclear 45 No details.
1a2w_B LocHom Extracellular 100 rnp_bovin Loc3D Extracellular 76 No details.
2vpf_A LocHom Extracellular 100 plgf_human LocKey Extracellular 100 Growth Loc3D Extracellular 76 No details.
2rmb_G LocHom Cytoplasmic 100 cyph_human LocKey Nuclear 88.89 Transit Loc3D Cytoplasmic 44 No details.
1zei_A LocHom Extracellular 100 ins_balph LocKey Extracellular 100 Pharmaceutical,Hormone,Insulin Loc3D Extracellular 88 No details.
1bff LocHom Extracellular 100 fgf6_mouse LocKey Extracellular 100 Growth Loc3D Nuclear 54 No details.
3ins_D LocHom Extracellular 100 ins_horse LocKey Extracellular 100 Pharmaceutical,Hormone,Insulin Loc3D Cytoplasmic 58 No details.
1a5i_A LocHom Extracellular 100 hgfa_human LocKey Extracellular 100 Gamma-carboxyglutamic Loc3D Extracellular 70 No details.
1anc LocHom Extracellular 100 try2_rat LocKey Extracellular 100 Gamma-carboxyglutamic Loc3D Extracellular 93 No details.
1lde_A LocHom Cytoplasmic 100 adha_perma LocKey Cytoplasmic 100 Plasmid,NADP,Acetylation,Zinc,NAD,Metal-binding,Oxidoreductase Loc3D Cytoplasmic 45 No details.
1cbg LocHom vac 100 myr3_sinal Loc3D Cytoplasmic 66 No details.
1kmb_3 LocHom Extracellular 100 pspd_human LocKey Extracellular 100 Hydroxylation,Coiled Loc3D Nuclear 58 No details.
1fra LocKey Extracellular 100 Toxin,Neurotoxin,Venom Loc3D Extracellular 93 No details.
1hlt_L LocHom Extracellular 100 thrb_human LocKey Extracellular 100 Serine Loc3D Nuclear 88 No details.
1a15_B LocKey Extracellular 100 Chemotaxis,Growth Loc3D Nuclear 93 No details.
1cub LocHom Extracellular 100 cuti_fusso Loc3D Cytoplasmic 43 No details.
1awh_A LocHom Extracellular 100 thrb_human LocKey Extracellular 100 Serine Loc3D Nuclear 80 No details.