TMH Benchmark Advanced

TMH Benchmark

Advanced Method Evaluation

Step 1. Download Protein Data Set

To begin evaluating your advanced TMH prediction method you need to download the test protein data set:

tmheval.fa Uncompressed FASTA file
tmheval.gz Gzip (UNIX standard) compressed file
tmheval.zip Zip (Windows standard) compressed file


Step 2. Run Prediction Algorithm

At this point, you run your prediction algorithm using the protein sequences as the input.


Step 3. Submit Predictions for Evaluation

Upload the predictions to the server in one of the following formats. Click on the format header to see a detailed format description. If you cannot successfully upload your predictions, email
Andrew Kernytsky, and include the Request ID that you receive on the next page.

Format 1
Using Helix start & end residue numbers

>0
18,35
43,59
>1
>2
66,90
>3
22,39
43,62
69,88

Format 2
Using prediction for each residue

>0
LHHHHLLL
>1
LLLLLLLLLLHHHHH

Enter file name or click Browse...

Select the format you are using and click Upload.